Ecient Monte Carlo sampling by direct ̄attening of free energy barriers

نویسندگان

  • Gerhard Besold
  • Ole G. Mouritsen
چکیده

Systems undergoing ®rst-order phase transitions are accompanied by free energy barriers which separate the free energy minima characterizing the co-existing phases. These barriers grows with increasing system size. With conventional Monte Carlo simulation methods the characteristic time for crossing the barriers grows exponentially with system size and the system will necessarily get trapped in one of the free energy minima. In order to escape from this trapping, various novel simulation schemes (e.g., multicanonical/multimagnetical sampling, entropic sampling and simulated tempering) have been proposed and successfully applied to model systems. All these methods combine an iterative scheme with histogram reweighting techniques. We apply here another variant of these methods, which involves the use of shape functions, which are added to the model Hamiltonian in order to level out the free energy barriers. One of the virtues of this approach is the transparent formulation of the common philosophy underlying all the di€erent so-called `non-Boltzmann' simulational schemes devised to overcome free energy barriers. The basic principles of the method are presented. The easy adaption of the method to di€erent model systems is demonstrated by application to two case studies, a multi-state lattice model for phase equilibria in a binary lipid bilayer, and a twodimensional lattice gas model which exhibits interfacial melting, which are known to be notoriously dicult to study by conventional Monte Carlo methods. The practical aspects of the implementation of the method are discussed. The results demonstrate the eciency and versatility of the shape function method. 02.70.Lq; 05.70.Fh; 64.60.Cu; 87.15.Da Monte Carlo simulation; Multicanonical sampling; Non-Boltzmann sampling; Histograms; Spectral free energies; Shape functions; Asymmetric ®rst-order phase transitions; Binary lipid bilayers; Interfacial melting

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

A computational study of homogeneous liquid–vapor nucleation in the Lennard-Jones fluid

Umbrella sampling Monte Carlo simulations are used to calculate free energy barriers to homogeneous liquid–vapor nucleation in the superheated Lennard-Jones fluid. The calculated free energy barriers decrease with increased superheating and vanish at the spinodal curve. A statistical geometric analysis reveals the existence of two types of voids: Small interstitial cavities, which are present e...

متن کامل

Enhanced Monte Carlo Sampling through Replica Exchange with Solute Tempering

With a view to improving the consistency of free energy perturbation calculations in Monte Carlo simulations of protein-ligand complexes, we have implemented the replica exchange with solute tempering (REST) method in the MCPRO software. By augmenting the standard REST approach with regular attempted jumps in selected dihedral angles, our combined method facilitates sampling of ligand binding m...

متن کامل

Torsional path integral Monte Carlo method for calculating the absolute quantum free energy of large molecules

A new technique for evaluating the absolute free energy of large molecules is presented. Quantum-mechanical contributions to the intramolecular torsions are included via the torsional path integral Monte Carlo ~TPIMC! technique. Importance sampling schemes based on uncoupled free rotors and harmonic oscillators facilitate the use of the TPIMC technique for the direct evaluation of quantum parti...

متن کامل

Comparison of trajectory based methods to find transition states

In various physical problems, determining energy barriers is very important in understanding dynamical properties of systems involving potential energy surfaces. The energy barriers of a given potential energy surface govern the rate of transition from one local equilibrium point to another point. Direct methods such as molecular dynamics simulations require tremendous computational resources t...

متن کامل

Vapor-to-droplet transition in a Lennard-Jones fluid: simulation study of nucleation barriers using the ghost field method.

We report a comprehensive Monte Carlo (MC) simulation study of the vapor-to-droplet transition in Lennard-Jones fluid confined to a spherical container with repulsive walls, which is a case study system to investigate homogeneous nucleation. The focus is made on the application of a modified version of the ghost field method (Vishnyakov, A.; Neimark, A. V. J. Chem. Phys. 2003, 119, 9755) to cal...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

برای دانلود متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

عنوان ژورنال:

دوره   شماره 

صفحات  -

تاریخ انتشار 2005